PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0055s0561.4.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NF-YC
Protein Properties Length: 261aa    MW: 29137.8 Da    PI: 6.5098
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0055s0561.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC176.82.1e-55791812101
                NF-YC   2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88 
                          l++fw++q   ie++tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+t+tdi
  Kaladp0055s0561.4.p  79 LQNFWANQyqeIEQTTDFKNHNLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITSTDI 168
                          89*****9999******************************************************************************* PP

                NF-YC  89 fdflvdivprdel 101
                          fdflvdivpr++l
  Kaladp0055s0561.4.p 169 FDFLVDIVPREDL 181
                          **********987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471134.69E-3366172IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.3E-3792164IPR009072Histone-fold
PfamPF008082.4E-21100163IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MEQQGHTQAP ATGVGGGSAQ MPYGVTSYQP NQILGSTPQG SARSPTQPGM PGSSAQVAQH  60
QLAYQHIHHQ QQQQLQQHLQ NFWANQYQEI EQTTDFKNHN LPLARIKKIM KADEDVRMIS  120
AEAPVIFARA CEMFILELTL RSWNHTEENK RRTLQKNDIA AAITSTDIFD FLVDIVPRED  180
LKDEVFANMP RGGAIPATGM PDALPYYYMA PQHAPPVGAP GMIMGRPVMD QPIYGQQSRP  240
YMGQQMWPHN QPQQRPPEDS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_C2e-4088178294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
4csr_B2e-4088178294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150156RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006378139.11e-127hypothetical protein POPTR_0010s03730g
SwissprotQ8L4B28e-83NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBLU5G1091e-127U5G109_POPTR; Uncharacterized protein
STRINGPOPTR_0010s03730.11e-127(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.41e-80nuclear factor Y, subunit C9